PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0834s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 251aa    MW: 29426.7 Da    PI: 6.3741
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0834s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.27.1e-2821321128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknr.atksgyWk 84 
                             +p GfrF+Ptdeel+ + L +k++g++++l ++i e+++y+ +P+dL+ ++ +a ++ e +++skr+ +       +r +   g Wk
  SapurV1A.0834s0010.1.p   2 VPHGFRFNPTDEELI-QVLDRKASGQEMPL-HFILEMNVYERDPQDLEwNESTAlSNGERFYYSKREIND------SReVHGLGWWK 80 
                             589************.88************.89**************96433332556889999987753......3325678**** PP

                     NAM  85 atgkdkevlsk...kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                             at + k+v++k   ++ lvg k+ L+f+     + ++++++kt+W+mhey+l
  SapurV1A.0834s0010.1.p  81 ATSHVKKVYAKdhrDQPLVGNKRPLTFHrfkdsERNRNNAVKTNWIMHEYSL 132
                             **********96545555**********8777656778889*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-312147IPR003441NAC domain
PROSITE profilePS5100533.2082147IPR003441NAC domain
PfamPF023651.9E-163132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVPHGFRFNP TDEELIQVLD RKASGQEMPL HFILEMNVYE RDPQDLEWNE STALSNGERF  60
YYSKREINDS REVHGLGWWK ATSHVKKVYA KDHRDQPLVG NKRPLTFHRF KDSERNRNNA  120
VKTNWIMHEY SLESRTTEWK LCKIKYKGKP SLQQHSSRND FETGSSTNVG VEQLDQERSL  180
VPADSAMPLD HYNQWCNMQQ LPLSPPYHPD DLPAPPSTSG GHNYYVNYQQ EELEPIVHEQ  240
PFPNLWSWMN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B4e-20215417171NAC domain-containing protein 19
4dul_A4e-20215417171NAC domain-containing protein 19
1ut7_B4e-20215417171NO APICAL MERISTEM PROTEIN
1ut7_A4e-20215417171NO APICAL MERISTEM PROTEIN
1ut4_B4e-20215417171NO APICAL MERISTEM PROTEIN
1ut4_A4e-20215417171NO APICAL MERISTEM PROTEIN
3swp_D4e-20215420174NAC domain-containing protein 19
3swp_C4e-20215420174NAC domain-containing protein 19
3swp_B4e-20215420174NAC domain-containing protein 19
3swp_A4e-20215420174NAC domain-containing protein 19
3swm_D4e-20215420174NAC domain-containing protein 19
3swm_C4e-20215420174NAC domain-containing protein 19
3swm_B4e-20215420174NAC domain-containing protein 19
3swm_A4e-20215420174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310439.11e-145hypothetical protein POPTR_0007s02050g
TrEMBLB9HH641e-145B9HH64_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02050.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15526612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.14e-22NAC domain containing protein 3